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kallisto | bustools
4.6
Free Highly regarded for its speed and accuracy in single-cell RNA-seq data pre-processing.
A workflow for pre-processing single-cell RNA-seq data, enabling cell x gene matrix generation and analysis.
Free pricingUpdated 2026-03-17
Best fits
Cell x gene matrix generationRNA velocity analysis
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About kallisto | bustools
kallisto | bustools is a modular and efficient workflow designed for pre-processing single-cell RNA-seq data. It addresses key steps such as associating reads with their cells of origin, collapsing reads based on unique molecular identifiers (UMIs), and generating cell x gene count matrices. The workflow supports diverse technologies like 10x, inDrops, and Dropseq, along with feature barcoding data from CITE-seq, REAP-seq, and MULTI-seq. By providing customizable workflows, kallisto | bustools facilitates quantification, RNA velocity analysis, and QC reporting for single-cell RNA-seq data. Its modular design allows users to adapt it to new technologies and protocols, ensuring robust and scalable single-cell data analysis.
Core Capabilities
kallisto | bustools is a modular and efficient workflow designed for pre-processing single-cell RNA-seq data.
Main Tasks
RNA Velocity Analysis
Explore all tools that specialize in rna velocity analysis. This domain focus ensures kallisto | bustools delivers optimized results for this specific requirement.
