MODELLER

Bioinformatics

The Industry Standard for Protein Comparative Modeling and Structural Bio-Refinement.

Open Targets

Bioinformatics

Systematic drug target identification and prioritization through large-scale genomic and clinical data integration.

Foldit

Bioinformatics

Gamified Protein Folding: Harnessing human intuition to solve complex biochemical puzzles for drug discovery.

Polly

Data Science

The AI-Ready Data Platform for Biomedical Data

KEGG

Bioinformatics

The gold standard for biological pathway mapping and genomic functional annotation.

Personal Genome Diagnostics (PGDx)

Bioinformatics

Empowering local laboratories with automated, IVD-cleared genomic profiling for precision oncology.

AlphaFold Protein Structure Database

Bioinformatics

Open access database of protein structure predictions to accelerate scientific research.

WikiPathways

Healthcare

WikiPathways is an open science platform for biological pathways contributed, updated, and used by the research community.

NAMD

Bioinformatics

Petascale parallel molecular dynamics for high-fidelity biomolecular simulations.

Genoox (Franklin)

Healthcare & Biotech

AI-driven genomic data analysis and variant interpretation platform.

MetaCyc

Bioinformatics

The gold-standard database of experimentally validated metabolic pathways and biochemical reactions.

National Center for Biotechnology Information (NCBI)

Bioinformatics & Genomics

The global backbone for biomedical data, genomic intelligence, and clinical research informatics.

OmicsDI

Bioinformatics Platform

The premier multi-omics discovery index for cross-repository data orchestration and meta-analysis.

Polymerize

AI & Machine Learning

AI-native Platform for Material Innovation

GenePattern

Bioinformatics

The premier open-source genomic workflow system for reproducible scientific research and advanced omics analysis.

OMOP Common Data Model

Healthcare

The OMOP Common Data Model (CDM) provides a standard structure and representation of observational health data, enabling large-scale analytics and evidence generation.

OMERO

Bio-image Informatics

The industry-standard open-source platform for secure scientific image data management and multidimensional visualization.

Integrative Genomics Viewer (IGV)

Bioinformatics

The industry-standard interactive visualization tool for integrated exploration of large-scale genomic datasets.

music21

Music Informatics

The industry-standard Python toolkit for computer-aided musicology and symbolic music analysis.

Seurat

Healthcare

Seurat is an R package designed for single-cell RNA-seq data analysis, exploration, and integration of diverse single-cell data types.

Bioconductor

Development

The gold standard for high-throughput genomic data analysis and reproducible bioinformatics.

kallisto | bustools

Bioinformatics

A workflow for pre-processing single-cell RNA-seq data, enabling cell x gene matrix generation and analysis.

Reactome

Healthcare

Reactome is a free, open-source, curated and peer-reviewed pathway database for visualizing, interpreting and analyzing pathway knowledge.

Human Protein Atlas

Healthcare

The Human Protein Atlas is an open-access resource that maps all human proteins in cells, tissues, and organs.

STAR

Bioinformatics

A fast spliced aligner for RNA-seq data.

Sapio Sciences

Lab Informatics

The leading agentic AI lab informatics platform, uniting LIMS, ELaiN, and Scientific Data Cloud on a shared native AI foundation.

Scanpy

Bioinformatics

Scalable toolkit for analyzing single-cell gene expression data in Python.

Monocle

Healthcare

Monocle is a toolkit for analyzing single-cell RNA-seq data, enabling researchers to build trajectories, classify cells, and find differentially expressed genes.

STRING

Bioinformatics

STRING is a database of known and predicted protein-protein interactions.

Riffyn

Science

Scientific Experiment Design and Data Analytics Platform

BioGRID

Development

The foundational open-access repository for curated protein and genetic interaction datasets.

Burrow-Wheeler Aligner (BWA)

Bioinformatics

A software package for mapping DNA sequences against a large reference genome.

STAR

Bioinformatics

Spliced Transcripts Alignment to a Reference (STAR) is an ultrafast RNA-seq aligner.

Galaxy Project

Bioinformatics Platform

The open-source ecosystem for data-intensive science, workflow automation, and reproducible research.

GATK (Genome Analysis Toolkit)

Bioinformatics

The industry-standard engine for high-throughput genomic variant discovery and clinical-grade sequencing analysis.

Galaxy

Developer

Galaxy is a web-based platform for data intensive biomedical research.

Robetta

Bioinformatics

A protein structure prediction service using deep learning and comparative modeling.

BioJulia

Development

High-performance computational biology and bioinformatics infrastructure for the Julia language.

Arcadia Science

Development

Accelerating biological discovery through open-source software and AI-driven research workflows.

EBI (European Bioinformatics Institute)

Education

EMBL-EBI provides freely available data resources and bioinformatics services to the scientific community, supporting research and innovation in molecular biology and related fields.

Philips Capsule

Healthcare Informatics

Your partner in advancing care delivery with a comprehensive, clinically focused ecosystem.

OmicsBox

Bioinformatics

The all-in-one bioinformatics platform for high-performance NGS data analysis and functional interpretation.

GeneMANIA

Bioinformatics

Advanced gene function prediction and association network integration for precision genomics.

ModelSEED

Developer

ModelSEED is a computational platform for genome-scale metabolic model reconstruction and analysis.

Minimap2

Bioinformatics

A versatile pairwise aligner for genomic and spliced nucleotide sequences.

Biopython

Development

The foundational open-source library for biological computation and bioinformatics in Python.

Materials Zone

Materials Informatics

Accelerate materials discovery with a unified Materials Informatics platform and AI-driven R&D.